Amyotrophic Lateral Sclerosis Research Open access Peer reviewed

Single-nucleus sequencing reveals enriched expression of genetic risk factors in extratelencephalic neurons sensitive to degeneration in ALS

Francesco Limone, Daniel A. Mordes, Alexander Benavides Couto, Brian Joseph and 14 more

Nature Aging | Jun 21, 2024 | 29 citations

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Using single-nucleus RNA sequencing data from patients with sporadic amyotrophic lateral sclerosis cortices, the authors find that higher expression of ALS risk genes is accompanied by upregulation of stress responses in groups of extratelencephalic neurons.

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Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disorder characterized by a progressive loss of motor function linked to degenerating extratelencephalic neurons/Betz cells (ETNs). The reasons why these neurons are selectively affected remain unclear. Here, to understand the unique molecular properties that may sensitize ETNs to ALS, we performed RNA sequencing of 79,169 single nuclei from cortices of patients and controls. In both patients and unaffected individuals, we found significantly higher expression of ALS risk genes in THY1+ ETNs, regardless of diagnosis. In patients, this was accompanied by the induction of genes involved in protein homeostasis and stress responses that were significantly induced in a wide collection of ETNs. Examination of oligodendroglial and microglial nuclei revealed patient-specific downregulation of myelinating genes in oligodendrocytes and upregulation of an endolysosomal reactive state in microglia. Our findings suggest that selective vulnerability of extratelencephalic neurons is partly connected to their intrinsic molecular properties sensitizing them to genetics and mechanisms of degeneration.

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Authors

Researchers on this paper

Francesco Limone

first | Harvard University | ORCID 0000-0002-2482-8801

Daniel A. Mordes

middle | Broad Institute

Alexander Benavides Couto

middle | Harvard University

Brian Joseph

middle | Harvard University | ORCID 0000-0001-9876-0021

Jana M. Mitchell

middle | Harvard University | ORCID 0000-0002-2113-5989

Martine Therrien

middle | Broad Institute | ORCID 0000-0003-3150-4052

Sulagna Ghosh

middle | Broad Institute | ORCID 0000-0003-1833-7296

Daniel Meyer

middle | Harvard University | ORCID 0000-0003-4720-9891

Yingying Zhang

middle | Harvard University | ORCID 0000-0002-3435-1330

Melissa Goldman

middle | Harvard University | ORCID 0000-0003-1469-5360

Laura Bortolin

middle | Harvard University

Inma Cobos

middle | Massachusetts General Hospital | ORCID 0000-0002-2043-1890

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Citation

BibTeX

@article{Limone2024Single,
  title = {Single-nucleus sequencing reveals enriched expression of genetic risk factors in extratelencephalic neurons sensitive to degeneration in ALS},
  author = {Francesco Limone and Daniel A. Mordes and Alexander Benavides Couto and Brian Joseph and Jana M. Mitchell and Martine Therrien and Sulagna Ghosh and Daniel Meyer and Yingying Zhang and Melissa Goldman and Laura Bortolin and Inma Cobos and Beth Stevens and Steven A. McCarroll and Irena Kadiu and Aaron Burberry and Olli Pietiläinen and Kevin Eggan},
  journal = {Nature Aging},
  year = {2024},
  doi = {10.1038/s43587-024-00640-0},
  url = {https://doi.org/10.1038/s43587-024-00640-0}
}

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