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Sodium Channel Blockers Demonstrate Binding Affinity for the Tandem Tudor Domain of the Epigenetic Hub UHRF1

Efstratios Tsakalidis, Mariangela Giannouli, Ifigeneia Akrani, Anthi Panara and 13 more

ChemMedChem | Aug 28, 2026

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These findings establish hydroxyprocaine as a highly viable chemical scaffold for TTD-targeted drug development and introduce a previously undocumented interdomain interaction between TTD and its N-terminal adjacent Ubiquitin-like domain.

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The tandem Tudor domain (TTD) of UHRF1 is a compelling epigenetic target for novel cancer therapeutics. Here, we integrate theoretical simulations, sophisticated biophysical evaluations and cellular assays to characterize potent TTD binders. Screening of small drug‐ and fragment‐like collections identifies several TTD ligands, with the most promising hit being the local anesthetic hydroxyprocaine. The ligand is characterized in terms of its binding requisites by calorimetry, affording a K d of 1.46 μM and a well‐balanced thermodynamic profile. Molecular dynamics simulations combined with heat capacity measurements and osmotic stress titrations confirm that hydroxyprocaine binds stably to the TTD by displacing approximately 26 interfacial water molecules upon complexation. A targeted follow‐up screen focusing on sodium channel blockers yields two additional, although less promising hits, mexiletine and triamterene. In the DU145 prostate cancer cell line, hydroxyprocaine treatment significantly up‐regulates key downstream targets including the tumor‐suppressor p53 and, to a lesser degree, the stress and inflammation regulators p38 and p65, respectively, while exhibiting very low cytotoxicity. Finally, a previously undocumented interdomain interaction between TTD and its N‐terminal adjacent Ubiquitin‐like domain is reported, introducing a novel, potentially druggable UHRF1 regulatory feature. Together, these findings establish hydroxyprocaine as a highly viable chemical scaffold for TTD‐targeted drug development.

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Efstratios Tsakalidis

first | National and Kapodistrian University of Athens

Mariangela Giannouli

middle | National and Kapodistrian University of Athens

Ifigeneia Akrani

middle | National and Kapodistrian University of Athens

Anthi Panara

middle | National and Kapodistrian University of Athens | ORCID 0000-0001-9730-6767

Eleni Katalagarianou

middle | National and Kapodistrian University of Athens

Kyriaki Degaita

middle | National and Kapodistrian University of Athens

Maria Giahou

middle | National and Kapodistrian University of Athens

Konstantina Kyriakou

middle | National and Kapodistrian University of Athens

Maria Routsi

middle | National and Kapodistrian University of Athens

Panagiota Nikolaou

middle | National and Kapodistrian University of Athens | ORCID 0000-0002-7777-6726

Evangelia Tsitsou

middle | National and Kapodistrian University of Athens

Aggeliki Tsoka

middle | National and Kapodistrian University of Athens

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BibTeX

@article{Tsakalidis2026Sodium,
  title = {Sodium Channel Blockers Demonstrate Binding Affinity for the Tandem Tudor Domain of the Epigenetic Hub UHRF1},
  author = {Efstratios Tsakalidis and Mariangela Giannouli and Ifigeneia Akrani and Anthi Panara and Eleni Katalagarianou and Kyriaki Degaita and Maria Giahou and Konstantina Kyriakou and Maria Routsi and Panagiota Nikolaou and Evangelia Tsitsou and Aggeliki Tsoka and Constantinos C. Vorgias and Emmanuel Mikros and Evagelos Gikas and Eleni Κ. Efthimiadou and Vassilios Myrianthopoulos},
  journal = {ChemMedChem},
  year = {2026},
  doi = {10.1002/cmdc.70473},
  url = {https://doi.org/10.1002/cmdc.70473}
}

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