Immune Cell Function and Interaction Open access Peer reviewed

Cytokines drive the formation of memory-like NK cell subsets via epigenetic rewiring and transcriptional regulation

Jennifer A. Foltz, Jennifer Tran, Pamela Wong, Changxu Fan and 25 more

Science Immunology | Jun 28, 2024 | 30 citations

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It is discovered that NK cell activation with IL-12/15/18 results in previously unappreciated diverse cellular fates and identifies new strategies to enhance NK therapies, shed light on the molecular mechanisms governing cytokine-induced NK memory and may help to inform NK-based immunotherapies.

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Activation of natural killer (NK) cells with the cytokines interleukin-12 (IL-12), IL-15, and IL-18 induces their differentiation into memory-like (ML) NK cells; however, the underlying epigenetic and transcriptional mechanisms are unclear. By combining ATAC-seq, CITE-seq, and functional analyses, we discovered that IL-12/15/18 activation results in two main human NK fates: reprogramming into enriched memory-like (eML) NK cells or priming into effector conventional NK (effcNK) cells. eML NK cells had distinct transcriptional and epigenetic profiles and enhanced function, whereas effcNK cells resembled cytokine-primed cNK cells. Two transcriptionally discrete subsets of eML NK cells were also identified, eML-1 and eML-2, primarily arising from CD56bright or CD56dim mature NK cell subsets, respectively. Furthermore, these eML subsets were evident weeks after transfer of IL-12/15/18-activated NK cells into patients with cancer. Our findings demonstrate that NK cell activation with IL-12/15/18 results in previously unappreciated diverse cellular fates and identifies new strategies to enhance NK therapies.

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Authors

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Jennifer A. Foltz

first | Washington University in St. Louis | ORCID 0000-0001-9158-3464

Jennifer Tran

middle | Washington University in St. Louis | ORCID 0000-0001-5339-1218

Pamela Wong

middle | Washington University in St. Louis | ORCID 0000-0002-6856-2603

Changxu Fan

middle | James S. McDonnell Foundation | ORCID 0000-0002-4375-4019

E. E. Schmidt

middle | Washington University in St. Louis

Bryan Fisk

middle | Washington University in St. Louis | ORCID 0000-0002-7648-1360

Michelle Becker‐Hapak

middle | Washington University in St. Louis | ORCID 0000-0003-0323-7233

David A. Russler‐Germain

middle | Washington University in St. Louis | ORCID 0000-0003-1009-2247

Jeanette Johnson

middle | Johns Hopkins University | ORCID 0000-0002-8268-5335

Nancy D. Marin

middle | Washington University in St. Louis | ORCID 0000-0002-2626-3349

Celia C. Cubitt

middle | Washington University in St. Louis | ORCID 0000-0003-0037-9324

Patrick Pence

middle | Washington University in St. Louis | ORCID 0000-0002-2970-9342

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BibTeX

@article{Foltz2024Cytokines,
  title = {Cytokines drive the formation of memory-like NK cell subsets via epigenetic rewiring and transcriptional regulation},
  author = {Jennifer A. Foltz and Jennifer Tran and Pamela Wong and Changxu Fan and E. E. Schmidt and Bryan Fisk and Michelle Becker‐Hapak and David A. Russler‐Germain and Jeanette Johnson and Nancy D. Marin and Celia C. Cubitt and Patrick Pence and Joseph Rueve and Sushanth Pureti and Kimberly Hwang and Feng Gao and Alice Y. Zhou and Mark P. Foster and Timothy Schappe and Lynne Marsala and Melissa M. Berrien-Elliott and Amanda F. Cashen and Jeffrey J. Bednarski and Elana J. Fertig and Obi L. Griffith and Malachi Griffith and Ting Wang and Allegra A. Petti and Todd A. Fehniger},
  journal = {Science Immunology},
  year = {2024},
  doi = {10.1126/sciimmunol.adk4893},
  url = {https://doi.org/10.1126/sciimmunol.adk4893}
}

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